fungus

<p>This is the output from a MrBayes run of 10,000,000 generations using the analysis settings from the original .nex file.  
Sampling is one tree per 40,000 generations.  Four chains are included, each with its associated log file.</p>

datasets

Implements various tests, visualizations, and metrics
for diagnosing convergence of MCMC chains in phylogenetics.  It implements
and automates many of the functions of the AWTY package in the R
environment, as well as a host of other functions.  Warren, Geneva, and Lanfear (2017), <doi:10.1093/molbev/msw279>.

Dan Warren

rwty

R We There Yet? Visualizing MCMC Convergence in Phylogenetics

Anthony Geneva

Rob Lanfear

Luke Harmon

April Wright

Diego Mallo

Klaus Schliep

Kelly Luke

Kendall Michelle

Smith Martin

fungus function

<p>A data frame with four chains of 251 phylogenetic trees and associated likelihood and parameter values.</p>

Format

MrBayes output from analysis of Hibbett et al. data — fungus

MrBayes output from analysis of Hibbett et al. data

fungus: MrBayes output from analysis of Hibbett et al. data

Description

Usage

Arguments

Format

References