rcX: Reformatted data for chromosome X set to be used as input to process function
Description
This is an object of type readCounts provides with example of experimental data for a subset of X chromosome genes.
The full model requires a combination of total read counts (y) - all the reads belonging for a gene,
and finding out which of these reads we can specifically attribute to allele A or allele B - allele specific counts (n),
separately the reads attributed specifically to allele B (n0B).
Also, tausB - is the Xce effect for each F1 mouse, which specifies the proportion of allele specific reads belonging to allele B.
Also, it includes the other data pieces to fit the model: kappas - total number of counts for each mouse, on log scale,
index - specifying which cross each mouse belongs to, and geneids - Ensembl ids of genes.
They, as well as the datasets simulated with simRX can be fitted using process with appropriate options chrom="X" and field model to be either "full" or "short".