sSeq (version 1.10.0)

Tuch: An example of real experiment.

Description

A subset of the real experiment Tuch et al. It is used as an example for running some functions in this package.

Usage

data(Tuch)

Format

A data.frame containing 6 columns and 10453 rows.

Source

The table of read counts was downloaded from GEO (accession GSE20116).

Details

It compares the expression of genes in normal human tissues and in tissues with oral squamous cell carcinoma. The experiment had a paired design in that pairs of normal and tumor samples were obtained from three patient. The six libraries were sequenced using the SOLiD platform.

References

Tuch, B. et al. (2010). Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations. PloS One, 5, e9317.

Examples

data(Tuch);
head(countsTable);