sSeq (version 1.10.0)

getNormFactor: Estimate size factors

Description

Calculate the size factor.

Usage

getNormFactor(countsTable1)

Arguments

countsTable1

A data.frame or a matrix of counts in which a row represents for a gene and a column represents for a sample. There must be at least two columns in countsTable.

References

Anders, S. and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biology, 11, R106.

Examples

#load a simulated data that includes a count table
data("countsTable");
getNormFactor(countsTable);