compute.var

computeBeta

computeMoments

computeTiltDirect

ComputeZ.fromS.R

ComputeZ.fromS.R.partial

computeZ.onechange

computeZ.onechange.sample

computeZ.squarewave.sample

dchi

fcompute.max.Z

fmscbs

fscan.max

getCutoffMultisampleWeightedChisq

matrix.max

mscbs.classify

pmarg.sumweightedchisq

pvalueMultisampleWeightedChisq

BAF2mBAF

Mode

check.overlap

cnv.data.chr

compute.baseline

compute.baseline.manual

delta.sd

diagnosis.QQ.plot

impute.missing.data

merging.segments.chr

seg.summary

seq.cnv

seq.data

seq.segs

seq.segs.merge

snp.cnv

snp.cnv.anno

snp.cnv.refine

snp.cnv.refine.anno

snp.data

snp.segs

snp.segs.merge

snp_table

vcf_table

These are the functions and data to which the users do not need to directly get access.


internals

Perform joint segmentation on two signal dimensions derived from
total read depth (intensity) and allele specific read depth (intensity) for
whole genome sequencing (WGS), whole exome sequencing (WES) and SNP array data.

internals: Internal Functions and Data

Description

Arguments