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safetyCharts

The {safetyCharts} R package contains a set of charts used in clinical trial research. These charts are optimized for usage with the {safetyGraphics} package and shiny application, but can also easily be used as standalone displays.

Chart Types

There are several types of charts included in this package:

  • Static Displays - These are written as R functions that output static statistical displays. See the help files for each chart for more details. Saved in \R.
  • htmlwidgets - Interactive graphics written in javascript and configured for R using the htmlwidgets package. Saved in \inst\htmlwidgets.
  • Chart configuration Files - YAML files specifying chart details needed for safetyGraphics. Saved in \inst\config.

For more information on using these charts with {safetyGraphics} see this vignette.

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Install

install.packages('safetyCharts')

Monthly Downloads

349

Version

0.3.0

License

MIT + file LICENSE

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Maintainer

Jeremy Wildfire

Last Published

March 22nd, 2022

Functions in safetyCharts (0.3.0)

demogRTF_table

create demographics RTF table
lab_distribution_ui

Lab distribution Module - UI
QT_OutlierExplorer_server

QT Outlier Explorer Module - UI
meta_aes

Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the ae domain. One record per unique data mapping
init_safetyShiftPlot

Initialize Settings for Safety Shift Plot widget
QT_OutlierExplorer_ui

QT Outlier Explorer Module - UI
safety_results_over_time

Safety Results Over Time plot
QT_Outlier_Explorer

QT Outlier Explorer
demogRTF_server

Demographics Table RTF - UI
meta_labs

Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the labs domain. One record per unique data mapping
meta_hepExplorer

Metadata data frame containing information about the data mapping used to configure safetyGraphics for the hepExplorer Chart. One record per unique data mapping
lab_distribution_server

lab distribution Module - Server
tendril_chart

Tendril plot
hepExplorer

Make standalone hepExplorer html widget
render_widget

Render an htmlwidget using standard safetyGraphics workflow
safetyOutlierExplorer_server

Safety Outlier Explorer Module - UI
init_aeExplorer

Initialize Settings for Adverse Event Explorer widget
meta_ecg

Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the ecg domain. One record per unique data mapping
safetyOutlierExplorer_ui

Safety Outlier Explorer Module - UI
safety_outlier_explorer

Safety Outlier Explorer
meta_dm

Metadata data frame containing information about the data mapping used to configure safetyGraphics charts for the dm domain. One record per unique data mapping
init_aeTimelines

Initialize Settings for AE Timeline widget
init_paneledOutlierExplorer

Initialize Settings for Paneled Outlier Explorer widget
init_safetyOutlierExplorer

Initialize Settings for Safety Outlier Explorer widget
init_safetyResultsOverTime

Initialize Settings for Safety Results Over Time widget
demogRTF_ui

Demographics Table RTF - UI