samplr (version 1.0.1)

calc_all: Diagnostics Wrapper

Description

Calculates all diagnostic functions in the samplr package for a given chain. Optionally, plots them.

Usage

calc_all(chain, plot = TRUE, acf.alpha = 0.05, acf.lag.max = 100)

Value

A list with all diagnostic calculations (a list of lists); and optionally a grid of plots.

Arguments

chain

Vector of n length, where n is the number of trials or sampler iterations

plot

Boolean. Whether to additionally plot the diagnostics.

acf.alpha, acf.lag.max

Additional parameters to calc_autocorr.

Examples

set.seed(1)
chain1 <- sampler_mh(1, "norm", c(0,1), diag(1))
diagnostics <- calc_all(chain1[[1]])
names(diagnostics)