ppi.CC: Yeast protein interaction network
Description
A network of 241 interactions among 134 proteins. They were assembled
by Jiang et al. (see below), from various sources, and pertain to only
those proteins annotated, as of January 2007, with the term “cell
communication” in the gene ontology (GO) database.
Format
An undirected igraph graph object, with vertex attributes:
- ‘name’: the name of the protein.
- ‘ICSC’: whether the protein is annotated with the
“intracellular signaling cascade” GO term, zero or one.
- ‘IPR000198’: whether the protein contains the
‘rho GTPase-activating protein domain’ (IPR000198) motif.
- ‘IPR000403’: whether the protein contains the
‘phosphatidylinositol 3-/4-kinase, catalytic domain’
(IPR000403) motif.
- ‘IPR001806’: whether the protein contains the
‘small GTPase superfamily’ (IPR001806) motif.
- ‘IPR001849’: whether the protein contains the
‘pleckstrin homology domain’ (IPR001849) motif.
- ‘IPR002041’: whether the protein contains the
‘ran GTPase’ (IPR002041) motif.
- ‘IPR003527’: whether the protein contains the
‘mitogen-activated protein (MAP) kinase, conserved site’
(IPR003527) motif.
Source
See the reference below. Please cite it if you use this dataset in
your work.References
X. Jiang, N. Nariai, M. Steffen, S. Kasif, E. Kolaczyk: Integration of
relational and hierarchical network information for protein
function prediction. BMC Bioinform. 9, 350 (2008).