acuteInflammation

A dataset containing the concentrations of 22 mediators of inflammation over an episode of acute inflammation. The mediators have been measured at 7 time-points on 8 subjects, concentration values have been unit-variance scaled for each variable.

datasets

A graphical and automated pipeline for the analysis
of short time-series in R ('santaR'). This approach is designed to accommodate asynchronous
time sampling (i.e. different time points for different individuals),
inter-individual variability, noisy measurements and large numbers of variables.
Based on a smoothing splines functional model, 'santaR' is able to detect variables
highlighting significantly different temporal trajectories between study groups.
Designed initially for metabolic phenotyping, 'santaR' is also suited for other Systems Biology
disciplines. Command line and graphical analysis (via a 'shiny' application) enable fast and
parallel automated analysis and reporting, intuitive visualisation and comprehensive plotting
options for non-specialist users.

Arnaud Wolfer

santaR

Short Asynchronous Time-Series Analysis

Timothy Ebbels

Joe Cheng

acuteInflammation function

List of 2 data frames of 56 rows each, containing the 22 measured variables (data) and the corresponding sampling metadata (meta):<dl>
 	<dt>data: var</dt>
<dd>mediator concentration, unit-variance scaled</dd>	<dt>meta: time</dt>
<dd>time of the measurement, in hour</dd>	<dt>meta: ind</dt>
<dd>subject ID for the measurement</dd>	<dt>meta: group</dt>
<dd>group membership of the subject/measurement</dd>
</dl>

Format

Measurement of 22 inflammatory mediators across time — acuteInflammation

List of 2 data frames of 56 rows each, containing the 22 measured variables (data) and the corresponding sampling metadata (meta):<dl>
 	<dt>data: var</dt>
<dd>mediator concentration, unit-variance scaled</dd>

	<dt>meta: time</dt>
<dd>time of the measurement, in hour</dd>

	<dt>meta: ind</dt>
<dd>subject ID for the measurement</dd>

	<dt>meta: group</dt>
<dd>group membership of the subject/measurement</dd>


</dl>

acuteInflammation: Measurement of 22 inflammatory mediators across time

Description

Usage

Arguments

Format