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sapFinder (version 1.10.0)

A package for variant peptides detection and visualization in shotgun proteomics.

Description

sapFinder is developed to automate (1) variation-associated database construction, (2) database searching, (3) post-processing, (4) HTML-based report generation in shotgun proteomics.

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Version

Version

1.10.0

License

GPL-2

Maintainer

Shaohang Xu

Last Published

February 15th, 2017

Functions in sapFinder (1.10.0)

reportCreator

reportCreator
parserGear

parserGear
runTandem

run xtandem
dbCreator

dbCreator
easyRun

easyRun