Write the standard R MD5 manifest into an installed package directory so that
checkMD5sums (and IQLM) can verify file integrity.
The manifest records the md5 checksum of every installed file. It is the same
MD5 file that CRAN ships and that R's own installer writes; packages installed
from CRAN already contain it, but a local source install usually does not (which is
why the IQ integrity check then reports WARN). Run writeMD5LM() once,
immediately after installing the package, to record the trusted baseline; thereafter
checkMD5sums() detects any later modification of the installed files.