savR (version 1.10.0)

clusterQualityGtN: Get the proportion of clusters over a specified quality threshold

Description

Return the ratio of clusters with a quality score less than or equal to a specified value (n) for the requested lanes and cycles.

Usage

clusterQualityGtN(project, lane, cycle, n)
"clusterQualityGtN"(project, lane, cycle, n = 30L)

Arguments

project

SAV project

lane

lane(s) number

cycle

cycle(s) number

n

quality threshold

Examples

## Not run: 
# example(savR)
# clusterQualityGtN(fc, 1L, 25L, 30L)
# ## End(Not run)