illuminaFlowCellLayout-class


Class representation of the features of an Illumina flow cell.


Parse Illumina Sequence Analysis Viewer (SAV) files,
access data, and generate QC plots.

R Brent Calder

savR

Parse and analyze Illumina SAV files

illuminaFlowCellLayout-class function

 <dl>
<dt><code>lanecount</code>:</dt><dd>Number of lanes on the flowcell</dd> <dt><code>surfacecount</code>:</dt><dd>Number of surfaces</dd> <dt><code>swathcount</code>:</dt><dd>Number of imaging swaths</dd> <dt><code>tilecount</code>:</dt><dd>Number of tiles per swath</dd> <dt><code>sectionperlane</code>:</dt><dd>Number of sections per lane (NextSeq)</dd> <dt><code>lanepersection</code>:</dt><dd>Number of lanes per section (NextSeq)</dd> <dt><code>tilenamingconvention</code>:</dt><dd>Description of deviation from original formatting layout</dd> </dl> 

Slots

Class representation of the features of an Illumina flow cell.

illuminaFlowCellLayout-class: Layout of an Illumina flowcell

Description

Arguments

Slots