savCorrectedIntensityFormat-class


Lane, tile, cycle, average intensity, corrected intensities (ACGT),
average corrected called intensities (ACGT), number of no-calls,
number of (ACGT) calls, and signal to noise ratio.


Parse Illumina Sequence Analysis Viewer (SAV) files,
access data, and generate QC plots.

R Brent Calder

savR

Parse and analyze Illumina SAV files

savCorrectedIntensityFormat-class function

 <dl>
<dt><code>name</code>:</dt><dd>vector of column names</dd> <dt><code>type</code>:</dt><dd>vector of data types of elements</dd> <dt><code>lengths</code>:</dt><dd>vector of byte lengths for each element</dd> <dt><code>order</code>:</dt><dd>vector of column names for sorting</dd> <dt><code>version</code>:</dt><dd>integer version number</dd> </dl> 

Slots

Lane, tile, cycle, average intensity, corrected intensities (ACGT),
average corrected called intensities (ACGT), number of no-calls,
number of (ACGT) calls, and signal to noise ratio.

savCorrectedIntensityFormat-class: Corrected Intensity formatter

Description

Arguments

Slots