savExtractionFormat-class


Lane, tile, cycle, FWHM (ACGT), intensity (ACGT), datestamp, timestamp.
Datestamp and timestamp are munged at the moment because R does not
have native support for 32-bit unsigned integers and I have not implemented
a solution.


Parse Illumina Sequence Analysis Viewer (SAV) files,
access data, and generate QC plots.

R Brent Calder

savR

Parse and analyze Illumina SAV files

savExtractionFormat-class function

 <dl>
<dt><code>name</code>:</dt><dd>vector of column names</dd> <dt><code>type</code>:</dt><dd>vector of data types of elements</dd> <dt><code>lengths</code>:</dt><dd>vector of byte lengths for each element</dd> <dt><code>order</code>:</dt><dd>vector of column names for sorting</dd> <dt><code>version</code>:</dt><dd>integer version number</dd> </dl> 

Slots

Lane, tile, cycle, FWHM (ACGT), intensity (ACGT), datestamp, timestamp.
Datestamp and timestamp are munged at the moment because R does not
have native support for 32-bit unsigned integers and I have not implemented
a solution.

savExtractionFormat-class: Extraction Metrics formatter

Description

Arguments

Slots