savProject-class


Represents a flowcell, metadata and parsed SAV information


Parse Illumina Sequence Analysis Viewer (SAV) files,
access data, and generate QC plots.

R Brent Calder

savR

Parse and analyze Illumina SAV files

savProject-class function

 <dl>
<dt><code>location</code>:</dt><dd>Full path to flowcell directory</dd> <dt><code>reads</code>:</dt><dd>List of <a rd-options="" href="/link/illuminaRead-class?package=savR&version=1.10.0" data-mini-rdoc="savR::illuminaRead-class">illuminaRead-class</a></dd> <dt><code>layout</code>:</dt><dd><a rd-options="" href="/link/illuminaFlowCellLayout-class?package=savR&version=1.10.0" data-mini-rdoc="savR::illuminaFlowCellLayout-class">illuminaFlowCellLayout-class</a></dd> <dt><code>runid</code>:</dt><dd>Run ID</dd> <dt><code>number</code>:</dt><dd>Run number</dd> <dt><code>flowcell</code>:</dt><dd>Flowcell ID</dd> <dt><code>instrument</code>:</dt><dd>Instrument ID</dd> <dt><code>date</code>:</dt><dd>Run date</dd> <dt><code>cycles</code>:</dt><dd>Total number of cycles</dd> <dt><code>directions</code>:</dt><dd>Total number of sequence runs (ends)</dd> <dt><code>parsedData</code>:</dt><dd>SAV data</dd> </dl> 

Slots

Represents a flowcell, metadata and parsed SAV information

savProject-class: SAV project class

Description

Arguments

Slots