savR (version 1.10.0)

tileMetrics: Get Tile Metrics

Description

Returns the Tile Metrics SAV data.

Usage

tileMetrics(project)
"tileMetrics"(project)

Arguments

project

SAV project

Value

sorted data.frame of tile metrics

Details

Metrics for each tile are encoded in the following format:

cluster density:

100

PF cluster density:

101

number of clusters:

102

number of PF clusters:

103

phasing for read N:

(200 + (N - 1) * 2)

prephasing for read N:

(201 + (N - 1) * 2)

percent aligned for read N:

(300 + N - 1)

control lane:

400

lane:

Lane number

tile:

Tile ID

code:

Code described above

value:

Value for code key

References

Codes for Tile Metrics were obtained from the Python Illuminate package: https://bitbucket.org/invitae/illuminate

Examples

example(savR)
colnames(tileMetrics(fc))