sbgr (version 1.0.0)

pipeline_details: Returns the details of a pipeline for a project

Description

Returns the details of a pipeline (runtime and regular parameters, description etc.) for a project.

Usage

pipeline_details(auth_token = NULL, project_id = NULL, pipeline_id = NULL, ...)

Arguments

auth_token

auth token

project_id

ID of a project you want to access.

pipeline_id

ID of a pipeline you want to access.

...

parameters passed to sbgapi function

Value

parsed list of the returned json

Details

When using the API to run a task, the user needs to set input files for all input nodes. To facilitate this, some pipeline input nodes may contain field "suggested files", that contains files which may be used as default input (reference genomes, SNP database, etc.).

Examples

token = '420b4672ebfc43bab48dc0d18a32fb6f'
req = pipeline_details(token,
            project_id = 'b0b3a611-6bb0-47e5-add7-a83402cf7858',
            pipeline_id = '55606ad4896a5d524656afd0')