fungusTreeNetwork

This data set provides information about $154$ fungi sampled on $51$ tree species.

datasets

A collection of tools and functions to adjust a variety of stochastic blockmodels (SBM).
Supports at the moment Simple, Bipartite, 'Multipartite' and Multiplex SBM (undirected or directed with Bernoulli, Poisson or Gaussian emission laws on the edges, and possibly covariate for Simple and Bipartite SBM). See Léger (2016) <doi:10.48550/arXiv.1602.07587>, 'Barbillon et al.' (2020) <doi:10.1111/rssa.12193> and 'Bar-Hen et al.' (2020) <doi:10.48550/arXiv.1807.10138>.

Julien Chiquet

Stochastic Blockmodels

Sophie Donnet

großBM team 

Pierre Barbillon

fungusTreeNetwork function

A list with the following entries:<ul>
<li>fungi_list list of the fungus species names</li>
<li>tree_list list of the tree species names</li>
<li>fungus_tree binary fungus-tree interactions</li>
<li>tree_tree weighted tree-tree interactions (number of common fungal species two tree species host)</li>
<li>covar_tree covariates associated to pairs of trees (namely genetic, taxonomic and geographic distances)</li>
</ul>

fungusTreeNetwork: fungus-tree interaction network

Description

Usage

Arguments

Format