combine_param_ple_stats

the directory to save the generated plots

plots_dir

the name of the file containing the detailed statistics for the estimated parameters

fileout_param_estim_details

Combine the parameter PLE statistics.

Provides an API for analysing repetitive parameter estimations and simulations of
mathematical models. Examples of mathematical models are Ordinary Differential equations (ODEs)
or Stochastic Differential Equations (SDEs) models. Among the analyses for parameter
estimation 'sbpiper' calculates statistics and generates plots for parameter density, PCA of the best
fits, parameter profile likelihood estimations (PLEs), and 2D parameter PLEs. These results can
be generated using all or a subset of the best computed parameter sets. Among the analyses
for model simulation 'sbpiper' calculates statistics and generates plots for deterministic
and stochastic time courses via cartesian and heatmap plots. Plots for the scan of one or two model
parameters can also be generated. This package is primarily used by the software 'SBpipe'.
Citation: Dalle Pezze P, Le Nov<c3><a8>re N. SBpipe: a collection of pipelines for automating
repetitive simulation and analysis tasks. BMC Systems Biology. 2017;11:46. <doi:10.1186/s12918-017-0423-3>.

combine_param_ple_stats: Combine the parameter PLE statistics.

Description

Usage

Arguments