plot_single_param_scan_data_homogen

model

the input directory containing the simulated data

inputdir

the output directory that will contain the simulated plots

outputdir

the label for the x axis (e.g. Time (min))

xaxis_label

the label for the y axis (e.g. Level (a.u.))

yaxis_label

Plot model single parameter scan time courses using homogeneous lines.

Provides an API for analysing repetitive parameter estimations and simulations of
mathematical models. Examples of mathematical models are Ordinary Differential equations (ODEs)
or Stochastic Differential Equations (SDEs) models. Among the analyses for parameter
estimation 'sbpiper' calculates statistics and generates plots for parameter density, PCA of the best
fits, parameter profile likelihood estimations (PLEs), and 2D parameter PLEs. These results can
be generated using all or a subset of the best computed parameter sets. Among the analyses
for model simulation 'sbpiper' calculates statistics and generates plots for deterministic
and stochastic time courses via cartesian and heatmap plots. Plots for the scan of one or two model
parameters can also be generated. This package is primarily used by the software 'SBpipe'.
Citation: Dalle Pezze P, Le Nov<c3><a8>re N. SBpipe: a collection of pipelines for automating
repetitive simulation and analysis tasks. BMC Systems Biology. 2017;11:46. <doi:10.1186/s12918-017-0423-3>.

plot_single_param_scan_data_homogen: Plot model single parameter scan time courses using homogeneous lines.

Description

Usage

Arguments