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scAnnotate (version 0.3)

An Automated Cell Type Annotation Tool for Single-Cell RNA-Sequencing Data

Description

An entirely data-driven cell type annotation tools, which requires training data to learn the classifier, but not biological knowledge to make subjective decisions. It consists of three steps: preprocessing training and test data, model fitting on training data, and cell classification on test data. See Xiangling Ji,Danielle Tsao, Kailun Bai, Min Tsao, Li Xing, Xuekui Zhang.(2022) for more details.

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Version

Install

install.packages('scAnnotate')

Monthly Downloads

200

Version

0.3

License

GPL-3

Maintainer

Xuekui Zhang

Last Published

March 14th, 2024

Functions in scAnnotate (0.3)

eva_cal

eva_cal
pbmc1

pbmc1
scAnnotate

scAnnotate
pbmc2

pbmc2
predict_label

predict_label