find_specific_marker

A list of markers belong to the cluster.

gene_name

A list of markers belongs to a reference cell type.

f_list

A parameter to select the method to measure cluster and cell type
similarity<ul>
<li>jacc - Jaccard index.</li>
<li>ac - Accuracy.</li>
<li>f1 - F1 score.</li>
</ul>.

type

Calculate cluster and cell type similarity based on the markers.

A single-cell Clustering method using 'Autoencoder' and Network fusion ('scCAN') for segregating the cells from the high-dimensional 'scRNA-Seq' data. The software automatically determines the optimal number of clusters and then partitions the cells in a way such that the results are robust to noise and dropouts. 'scCAN' is fast and it supports Windows, Linux, and Mac OS.

find_specific_marker: find_specific_marker

Description

Usage

Arguments

Value