findcelltype

Evidence-based score and annotation for each cluster.

An automatic cluster-based annotation pipeline based on evidence-based score by matching the marker genes with known cell markers in tissue-specific cell taxonomy reference database for single-cell RNA-seq data. See Shao X, et al (2020) <doi:10.1016/j.isci.2020.100882> for more details.

Xin Shao

scCATCH

Single Cell Cluster-Based Annotation Toolkit for Cellular
Heterogeneity

findcelltype function

<dl><dt>object</dt>
<dd>scCATCH object generated from <code>findmarkergene</code>.</dd>
<dt>verbose</dt>
<dd>Show progress messages.</dd></dl>

Arguments

Evidence-based score and annotation for each cluster — findcelltype

<dl>

<dt>object</dt>
<dd>scCATCH object generated from <code>findmarkergene</code>.</dd>


<dt>verbose</dt>
<dd>Show progress messages.</dd>

</dl>

findcelltype: Evidence-based score and annotation for each cluster

Description

Usage

Value

Arguments