scCustomize (version 3.1.3)

Get_Reference_LIGER: Get Reference Dataset

Description

Function to select reference dataset to use in liger based on meta data information

Usage

Get_Reference_LIGER(liger_object, meta_data_column, value)

Value

dataset name as character

Arguments

liger_object

LIGER object name.

meta_data_column

meta data column to use for selecting largest dataset.

value

value from column meta_data_column to use for selecting largest dataset.

Examples

if (FALSE) {
# standalone use
ref_dataset <- Get_Reference_LIGER(liger_object = object, meta_data_column = "Treatment",
value = "Ctrl")

# use within `quantileNorm`
object <- quantileNorm(object = object, reference = Get_Reference_LIGER(liger_object = object,
meta_data_column = "Treatment", value = "Ctrl"))
}