ensembl_exAM_list

Ensembl IDs for immediate early genes (Ensembl version 112; 4/29/2024)

datasets

Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.

Samuel Marsh

scCustomize

Custom Visualizations & Functions for Streamlined Analyses of
Single Cell Sequencing

Ming Tang

Velina Kozareva

Lucas Graybuck

Zoe Clarke

ensembl_exAM_list function

A list of three vectors<dl>
<dt>Mus_musculus_exAM_union_ensembl</dt>
<dd>Ensembl ID for exAM genes from source publication (see below)</dd><dt>Homo_sapiens_exAM_union_ensembl</dt>
<dd>Human Ensembl ID for exAM genes for homologous genes from mouse gene list</dd><dt>Homo_sapiens_exAM_micro_ensembl</dt>
<dd>Human Ensembl ID for exAM genes for human microglia list</dd></dl>

Format

Immediate Early Gene (IEG) gene lists — ensembl_exAM_list

A list of three vectors<dl>
<dt>Mus_musculus_exAM_union_ensembl</dt>
<dd>Ensembl ID for exAM genes from source publication (see below)</dd>

<dt>Homo_sapiens_exAM_union_ensembl</dt>
<dd>Human Ensembl ID for exAM genes for homologous genes from mouse gene list</dd>

<dt>Homo_sapiens_exAM_micro_ensembl</dt>
<dd>Human Ensembl ID for exAM genes for human microglia list</dd>



</dl>

ensembl_exAM_list: Immediate Early Gene (IEG) gene lists

Description

Usage

Arguments

Format