scINSIGHT (version 0.1.5)

create_scINSIGHT: Create an scINSIGHT object.

Description

This function initializes an scINSIGHT object with normalized data passed in.

Usage

create_scINSIGHT(norm.data, condition)

Value

scINSIGHT object with norm.data slot set.

Arguments

norm.data

List of normalized expression matrices (genes by cells). Gene names should be the same in all matrices.

condition

Vector specifying sample conditions.

Examples

# Demonstration using matrices with randomly generated numbers
S1 <- matrix(runif(50000,0,2), 500,100)
S2 <- matrix(runif(60000,0,2), 500,120)
S3 <- matrix(runif(80000,0,2), 500,160)
S4 <- matrix(runif(75000,0,2), 500,150)
data = list(S1, S2, S3, S4)
sample = c("sample1", "sample2", "sample3", "sample4")
condition = c("control", "activation", "control", "activation")
names(data) = sample
names(condition) = sample
scINSIGHTx <- create_scINSIGHT(data, condition)