scMetaTraj_axis_score

Provides a framework for modeling cellular metabolic states and continuous
metabolic trajectories from single-cell RNA-seq data using pathway-level
scoring. Enables lineage-restricted metabolic analysis, metabolic
'pseudotime' inference, module-level trend analysis, and visualization of
metabolic state transitions.

Jinwei Dai

scMetaTraj

Metabolic State Space and Trajectory Analysis for Single-Cell
Data

scMetaTraj_axis_score function

<dl><dt>scores</dt>
<dd>Cell-by-module metabolic score matrix</dd>
<dt>axis_list</dt>
<dd>Named list defining metabolic axes</dd>
<dt>scale</dt>
<dd>Logical, whether to scale axis scores (Z-score)</dd></dl>

Arguments

Calculate metabolic axis scores — scMetaTraj_axis_score

<dl>

<dt>scores</dt>
<dd>Cell-by-module metabolic score matrix</dd>


<dt>axis_list</dt>
<dd>Named list defining metabolic axes</dd>


<dt>scale</dt>
<dd>Logical, whether to scale axis scores (Z-score)</dd>

</dl>

scMetaTraj_axis_score: Calculate metabolic axis scores

Description

Usage

Value

Arguments