scMetaTraj_cluster_profile

scMetaTraj_cluster_profile() computes representative metabolic
pathway activities for each metabolic cluster.

Provides a framework for modeling cellular metabolic states and continuous
metabolic trajectories from single-cell RNA-seq data using pathway-level
scoring. Enables lineage-restricted metabolic analysis, metabolic
'pseudotime' inference, module-level trend analysis, and visualization of
metabolic state transitions.

Jinwei Dai

scMetaTraj

Metabolic State Space and Trajectory Analysis for Single-Cell
Data

scMetaTraj_cluster_profile function

<dl><dt>scores</dt>
<dd>Numeric matrix, cells x pathways.</dd>
<dt>metabolic_cluster</dt>
<dd>Factor or character vector, length = nrow(scores).</dd>
<dt>stat</dt>
<dd>Character. "median" (default) or "mean".</dd>
<dt>scale</dt>
<dd>Logical. Whether to z-score pathways across clusters.</dd></dl>

Arguments

Summarize metabolic profiles of clusters — scMetaTraj_cluster_profile

<dl>

<dt>scores</dt>
<dd>Numeric matrix, cells x pathways.</dd>


<dt>metabolic_cluster</dt>
<dd>Factor or character vector, length = nrow(scores).</dd>


<dt>stat</dt>
<dd>Character. "median" (default) or "mean".</dd>


<dt>scale</dt>
<dd>Logical. Whether to z-score pathways across clusters.</dd>

</dl>

scMetaTraj_cluster_profile: Summarize metabolic profiles of clusters

Description

Usage

Value

Arguments