scMetaTraj_plot_gradient

Provides a framework for modeling cellular metabolic states and continuous
metabolic trajectories from single-cell RNA-seq data using pathway-level
scoring. Enables lineage-restricted metabolic analysis, metabolic
'pseudotime' inference, module-level trend analysis, and visualization of
metabolic state transitions.

Jinwei Dai

scMetaTraj

Metabolic State Space and Trajectory Analysis for Single-Cell
Data

scMetaTraj_plot_gradient function

<dl><dt>embedding</dt>
<dd>UMAP coordinates (data.frame or matrix)</dd>
<dt>score</dt>
<dd>Vector of metabolic axis score</dd>
<dt>title</dt>
<dd>Plot title</dd>
<dt>palette</dt>
<dd>Continuous color palette</dd></dl>

Arguments

Plot metabolic gradient on UMAP — scMetaTraj_plot_gradient

<dl>

<dt>embedding</dt>
<dd>UMAP coordinates (data.frame or matrix)</dd>


<dt>score</dt>
<dd>Vector of metabolic axis score</dd>


<dt>title</dt>
<dd>Plot title</dd>


<dt>palette</dt>
<dd>Continuous color palette</dd>

</dl>

scMetaTraj_plot_gradient: Plot metabolic gradient on UMAP

Description

Usage

Value

Arguments