scPloidy (version 0.3.0)

SHR_m154211: Liver Cells from a Rat

Description

The dataset includes 3572 nuclei obtained from the liver of a 16 weeks old male rat, which was fed normal diet. Overlapping of single-nucleus ATAC-seq fragments was computed with the fragmentoverlapcount function and saved as fragmentoverlap. The cell type of the nuclei are saved in the data.frame cells. The data for rat SHR_m154211 was taken from the publication cited below.

Usage

data(SHR_m154211)

Format

An object of class list of length 2.

Examples

data(SHR_m154211)
fragmentoverlap = SHR_m154211$fragmentoverlap
p = ploidy(fragmentoverlap, c(2, 4, 8))
head(p)
cells = SHR_m154211$cells
table(cells$celltype, p$ploidy.moment[match(cells$barcode, p$barcode)])