scRNAstat (version 0.1.1)

basic_qc: Basic Quality Control

Description

add `percent_mito`,`percent_ribo`,`percent_hb` to the Seurat class. And draw `VlnPlot` for these `qc` values.

Usage

basic_qc(sce, org = "human", group = "orig.ident", dir = ".")

Arguments

sce

An object of class Seurat

org

human or mouse, default: human

group

default:`orig.ident`,you can change it to `seurat_clusters` or `celltype`

dir

the path for saving the figures by `DotPlot` with known famous markers.

Value

list(p1,p2,p3,sce), the last one in the new `sce`.

Examples

# NOT RUN {
basic_qc(AJ064_small_sce,dir= tempdir())

# }