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scRNAtools (version 1.0)

Single Cell RNA Sequencing Data Analysis Tools

Description

We integrated the common analysis methods utilized in single cell RNA sequencing data, which included cluster method, principal components analysis (PCA), the filter of differentially expressed genes, pathway enrichment analysis and correlated analysis methods.

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Version

Install

install.packages('scRNAtools')

Monthly Downloads

210

Version

1.0

License

GPL-2

Maintainer

Qian Yang

Last Published

July 5th, 2018

Functions in scRNAtools (1.0)

exam

exam
scRNAtools_pca

PCA analysis
types

types
types_all

types_all
scRNAtools_Gene2exp_1

Present the expression of two genes
scRNAtools-package

Single Cell RNA Sequencing Data Analysis Tools
scRNAtools_Gene3exp_1

Present gene expression
scRNAtools_DEGsA

Identification of differentially expressed genes
exam1

exam1
example1

example1
corr_re

correlation index
example

example
DEGs

Users interested genes or differentially expressed genes
scRNAtools_inter_net

Construction of interactive network in scRNA sequencing data
scRNAtools_cor_map

Correlation analysis
scRNAtools_pca_3D

3D PCA analysis
scRNAtools_cor_map_r

Present correlation index in figure
scRNAtools_tsne

t-SNE analysis
scRNAtools_cluster

Cluster section
scRNAtools_PEA

Pathway enrichment analysis
scRNAtools_Geneexp

Expressed genes in scRNA sequencing data
scRNAtools_Geneexp_1

Present gene expression