f_my_correlation_test

Calculate spearman correlation p-value or return preset values.

Identifying cell types based on expression profiles is a pillar of single cell analysis. 'scROSHI' identifies cell types based on expression profiles of single cell analysis by utilizing previously obtained cell type specific gene sets. It takes into account the hierarchical nature of cell type relationship and does not require training or annotated data. A detailed description of the method can be found at: Prummer, Bertolini, Bosshard, Barkmann, Yates, Boeva, The Tumor Profiler Consortium, Stekhoven, and Singer (2022) <doi:10.1101/2022.04.05.487176>.

Lars Bosshard

scROSHI

Robust Supervised Hierarchical Identification of Single Cells

Michael Prummer

f_my_correlation_test function

<dl><dt>x</dt>
<dd>A numeric vector of values.</dd>
<dt>y</dt>
<dd>A numeric vector of values.</dd>
<dt>min_genes</dt>
<dd>A numeric value defining the threshold for the minimum number of genes.</dd></dl>

Arguments

Spearman correlation test — f_my_correlation_test

<dl>

<dt>x</dt>
<dd>A numeric vector of values.</dd>


<dt>y</dt>
<dd>A numeric vector of values.</dd>


<dt>min_genes</dt>
<dd>A numeric value defining the threshold for the minimum number of genes.</dd>

</dl>

f_my_correlation_test: Spearman correlation test

Description

Usage

Value

Arguments

Examples