marker_list

<p>Marker gene list for the test_sce_data set</p>

datasets

Identifying cell types based on expression profiles is a pillar of single cell analysis. 'scROSHI' identifies cell types based on expression profiles of single cell analysis by utilizing previously obtained cell type specific gene sets. It takes into account the hierarchical nature of cell type relationship and does not require training or annotated data. A detailed description of the method can be found at: Prummer, Bertolini, Bosshard, Barkmann, Yates, Boeva, The Tumor Profiler Consortium, Stekhoven, and Singer (2022) <doi:10.1101/2022.04.05.487176>.

Lars Bosshard

scROSHI

Robust Supervised Hierarchical Identification of Single Cells

Michael Prummer

marker_list function

<p>Marker gene list for all cell types as a list of genes with cell types as names</p>

marker_list: Marker gene list for the test SCE data Set

Description

Usage

Arguments

Format