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scSpatialSIM

A point pattern simulator R package for spatial cellular data

Installing scSpatialSIM to RStudio

To install scSpatialSIM, it is required to have devtools or remotes installed for their install_github() function:

if (!require("devtools", quietly = TRUE))
  install.packages("devtools")

devtools::install_github("FridleyLab/mIFsim@v0.1.3.3")

Vignettes

If you are interested in documentation and tutorials, please visit: https://fridleylab.github.io/scSpatialSIM/index.html

GitHub Repository

For source code, can click the GitHub icon in the upper right corner of the pkgdown site or follow this link: https://github.com/FridleyLab/scSpatialSIM/

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Version

Install

install.packages('scSpatialSIM')

Monthly Downloads

238

Version

0.1.3.4

License

MIT + file LICENSE

Issues

Pull Requests

Stars

Forks

Maintainer

Fridley Lab

Last Published

October 1st, 2024

Functions in scSpatialSIM (0.1.3.4)

CalculateDensity

Compute Simulation Heatmaps
GenerateHoles

Generate holes in a spatial simulation object
GenerateSpatialPattern

Generate Spatial Point Pattern
summary.SpatSimObj

summary function for SpatSimObj
GenerateTissue

Generate Tissue
wm

Round spatstat window
PlotSimulation

Plot Simulation
CreateSimulationObject

Create a spatial simulation object.
CreateSpatialList

Get Spatial Files from a SpatSimObj
GenerateCellPositivity

Generate Cell Positivity
ExtractParameters

Get Simulation Parameters
GenerateDistributions

Generate Characteristic Distributions of Cells
%>%

Pipe operator
SummariseSpatial

Summarise Spatial
UpdateSimulationWindow

Update the simulation window in a SpatSimObj
plot.SpatSimObj

plot function for SpatSimObj