genesets

<p>A list consists of pathway genesets of Homo sapiens (human) and Mus musculus (house mouse).</p>

datasets

A single-cell trajectory inference method using 'Autoencoder' and Minimum Spanning Tree (MST) from high dimensional 'scRNA-Seq' data. The software run clustering methods six times using 'scDHA' with the number of clusters set from 6 to 10. Then, the 'scTEP' calculates pseudotime based on multiple clustering results. Lastly, the 'scTEP' generates trajectory using MST algorithm and fine-tunes it according to the pseudotime of clusters.

Yifan Zhang

scTEP

Single-Cell Trajectory Inference using Ensemble Pseudotimes

Duc Tran

Tin Nguyen

Sergiu M. Dascalu

Frederick C. Harris, Jr.

genesets function

<p>An object of class <code>list</code> of length 2.</p>

Format

genesets — genesets

genesets: genesets

Description

Usage

Arguments

Format