goolam

<p>goolam datas set save as a SCE object.</p>

datasets

A single-cell trajectory inference method using 'Autoencoder' and Minimum Spanning Tree (MST) from high dimensional 'scRNA-Seq' data. The software run clustering methods six times using 'scDHA' with the number of clusters set from 6 to 10. Then, the 'scTEP' calculates pseudotime based on multiple clustering results. Lastly, the 'scTEP' generates trajectory using MST algorithm and fine-tunes it according to the pseudotime of clusters.

Yifan Zhang

scTEP

Single-Cell Trajectory Inference using Ensemble Pseudotimes

Duc Tran

Tin Nguyen

Sergiu M. Dascalu

Frederick C. Harris, Jr.

goolam function

<p>An object of class <code>SingleCellExperiment</code> with 41336 rows and 124 columns.</p>

Format

goolam — goolam

goolam: goolam

Description

Usage

Arguments

Format