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scam (version 1.1-1)

Shape constrained additive models

Description

Routines for generalized additive modelling under shape constraints on the component functions of the linear predictor. Models can contain multiple shape constrained (univariate and/or bivariate) and unconstrained terms. The routines of mgcv(gam) package are used for setting up the model matrix, printing and plotting the results. Penalized likelihood maximization based on Newton-Raphson method is used to fit a model with multiple smoothing parameter selection by GCV or UBRE/AIC.

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Version

Install

install.packages('scam')

Monthly Downloads

9,908

Version

1.1-1

License

GPL (>= 2)

Maintainer

Natalya Pya

Last Published

January 28th, 2012

Functions in scam (1.1-1)

smooth.construct.micx.smooth.spec

Constructor for monotone increasing and convex P-splines in SCAMs
Predict.matrix.mpi.smooth

Predict matrix method functions for SCAMs
scam.fit

Newton-Raphson method to fit SCAM
derivative.smooth

Derivative of the univariate constrained smooth term
smooth.construct.tesmd2.smooth.spec

Tensor product smoothing constructor for a bivariate function monotone decreasing in the second covariate
scam

Shape constrained additive models (SCAM) and integrated smoothness selection
smooth.construct.tesmd1.smooth.spec

Tensor product smoothing constructor for a bivariate function monotone decreasing in the first covariate
smooth.construct.mpi.smooth.spec

Constructor for monotone increasing P-splines in SCAMs
check.analytical

Checking the analytical gradient of the GCV/UBRE score
scam.check

Some diagnostics for a fitted scam object
marginal.matrices.tesmi2.ps

Constructs marginal model matrices for "tesmi2" and "tesmd2" bivariate smooths in case of B-splines basis functions for both unconstrained marginal smooths
monotonic.smooth.terms

Shape preserving smooth terms in SCAM
marginal.matrices.tesmi1.ps

Constructs marginal model matrices for "tesmi1" and "tesmd1" bivariate smooths in case of B-splines basis functions for both unconstrained marginal smooths
plot.scam

SCAM plotting
print.scam

Print a SCAM object
smooth.construct.micv.smooth.spec

Constructor for monotone increasing and concave P-splines in SCAMs
scam-package

Shape constrained additive models
residuals.scam

SCAM residuals
smooth.construct.mpd.smooth.spec

Constructor for monotone decreasing P-splines in SCAMs
predict.scam

Prediction from fitted SCAM model
smooth.construct.tesmi1.smooth.spec

Tensor product smoothing constructor for a bivariate function monotone increasing in the first covariate
summary.scam

Summary for a SCAM fit
smooth.construct.mdcx.smooth.spec

Constructor for monotone decreasing and convex P-splines in SCAMs
smooth.construct.tedmd.smooth.spec

Tensor product smoothing constructor for bivariate function subject to double monotone decreasing constraint
smooth.construct.tedmi.smooth.spec

Tensor product smoothing constructor for bivariate function subject to double monotone increasing constraint
smooth.construct.mdcv.smooth.spec

Constructor for monotone decreasing and concave P-splines in SCAMs
bfgs_gcv.ubre

Multiple Smoothing Parameter Estimation by GCV/UBRE
gcv.ubre_grad

The GCV/UBRE score value and its gradient
smooth.construct.tesmi2.smooth.spec

Tensor product smoothing constructor for a bivariate function monotone increasing in the second covariate
shape.constrained.smooth.terms

Shape preserving smooth terms in SCAM
smooth.construct.cx.smooth.spec

Constructor for convex P-splines in SCAMs
extrapolate.uni.scam

Extrapolation from the fitted SCAM model
vis.scam

Visualization of SCAM objects
derivative.scam

Derivative of the univariate smooth model terms