scape (version 1.0-9)

scape-package: Statistical Catch-at-Age Plotting Environment

Description

Import and plot results from statistical catch-at-age models, used in fisheries stock assessments.

concept

Fisheries stock assessment

Details

Import model results: ll{ importCol Coleraine model output } Plot model fit to data: ll{ plotCA catch at age plotCL catch at length plotIndex abundance index plotLA length at age } Plot derived quantities: ll{ plotB biomass, recruitment, and landings plotN numbers at age plotSel selectivity and maturity } Examples: ll{ x.cod, x.ling, x.oreo, x.sbw cod, ling, oreo, and whiting assessments }

References

Magnusson, A. (2005) R goes fishing: Analyzing fisheries data using AD Model Builder and R. Proceedings of the 5th International Workshop on Distributed Statistical Computing. Available at http://students.washington.edu/arnima/s/pdf/dsc.pdf.

See Also

All scape graphics are trellis plots, rendered with the lattice package. Once the best model(s) have been chosen, the scapeMCMC package can be used to diagnose MCMC runs.