scape v2.3-2
0
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Statistical Catch-at-Age Plotting Environment
Import, plot, and diagnose results from statistical
catch-at-age models, used in fisheries stock assessment.
Functions in scape
| Name | Description | |
| getSigmaI | Extract Abundance Index Sigma | |
| x.cod | Cod Assessment | |
| xmcmc | MCMC Results from Cod Assessment | |
| getN | Extract Sample Size | |
| estSigmaI | Estimate Abundance Index Sigma | |
| xproj | MCMC Projections from Cod Assessment | |
| importProj | Import Coleraine MCMC Projections | |
| plotN | Plot Numbers at Age | |
| plotIndex | Plot Abundance Index | |
| plotCL | Plot Catch at Length | |
| plotCA | Plot Catch at Age | |
| x.ling | Ling Assessment | |
| plotSel | Plot Selectivity and Maturity | |
| x.oreo | Oreo Assessment | |
| plotLA | Plot Length at Age | |
| importADCAM | Import ADCAM Model Results | |
| iterate | Get Candidate Sigmas and Sample Sizes | |
| importCol | Import Coleraine Model Results | |
| x.saithe | Saithe Assessment | |
| x.sbw | Whiting Assessment | |
| plotB | Plot Biomass, Recruitment, and Landings | |
| estN | Estimate Effective Sample Size | |
| importMCMC | Import Coleraine MCMC Results | |
| estSigmaR | Estimate Recruitment Sigma | |
| getSigmaR | Extract Recruitment sigma | |
| scape-package | Statistical Catch-at-Age Plotting Environment | |
| No Results! | ||
Vignettes of scape
| Name | ||
| dsc-vignette.Rnw | ||
| dsc.pdf | ||
| gallery.Rnw | ||
| mymodel.Rnw | ||
| No Results! | ||
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