scape v2.3-2

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Statistical Catch-at-Age Plotting Environment

Import, plot, and diagnose results from statistical catch-at-age models, used in fisheries stock assessment.

Functions in scape

Name Description
getSigmaI Extract Abundance Index Sigma
x.cod Cod Assessment
xmcmc MCMC Results from Cod Assessment
getN Extract Sample Size
estSigmaI Estimate Abundance Index Sigma
xproj MCMC Projections from Cod Assessment
importProj Import Coleraine MCMC Projections
plotN Plot Numbers at Age
plotIndex Plot Abundance Index
plotCL Plot Catch at Length
plotCA Plot Catch at Age
x.ling Ling Assessment
plotSel Plot Selectivity and Maturity
x.oreo Oreo Assessment
plotLA Plot Length at Age
importADCAM Import ADCAM Model Results
iterate Get Candidate Sigmas and Sample Sizes
importCol Import Coleraine Model Results
x.saithe Saithe Assessment
x.sbw Whiting Assessment
plotB Plot Biomass, Recruitment, and Landings
estN Estimate Effective Sample Size
importMCMC Import Coleraine MCMC Results
estSigmaR Estimate Recruitment Sigma
getSigmaR Extract Recruitment sigma
scape-package Statistical Catch-at-Age Plotting Environment
No Results!

Vignettes of scape

Name
dsc-vignette.Rnw
dsc.pdf
gallery.Rnw
mymodel.Rnw
No Results!

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Details

Date 2018-05-01
LazyData yes
License GPL (>= 2)
NeedsCompilation no
Packaged 2018-05-01 17:14:10 UTC; arnima
Repository CRAN
Date/Publication 2018-05-01 17:37:04 UTC
imports coda , Hmisc , lattice , stats , utils
suggests gdata
depends R (>= 2.10)
Contributors

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