Learn R Programming

⚠️There's a newer version (2.3.5) of this package.Take me there.

scape (version 2.3-2)

Statistical Catch-at-Age Plotting Environment

Description

Import, plot, and diagnose results from statistical catch-at-age models, used in fisheries stock assessment.

Copy Link

Version

Install

install.packages('scape')

Monthly Downloads

237

Version

2.3-2

License

GPL (>= 2)

Maintainer

Arni Magnusson

Last Published

May 1st, 2018

Functions in scape (2.3-2)

getSigmaI

Extract Abundance Index Sigma
x.cod

Cod Assessment
xmcmc

MCMC Results from Cod Assessment
getN

Extract Sample Size
estSigmaI

Estimate Abundance Index Sigma
xproj

MCMC Projections from Cod Assessment
importProj

Import Coleraine MCMC Projections
plotN

Plot Numbers at Age
plotIndex

Plot Abundance Index
plotCL

Plot Catch at Length
plotCA

Plot Catch at Age
x.ling

Ling Assessment
plotSel

Plot Selectivity and Maturity
x.oreo

Oreo Assessment
plotLA

Plot Length at Age
importADCAM

Import ADCAM Model Results
iterate

Get Candidate Sigmas and Sample Sizes
importCol

Import Coleraine Model Results
x.saithe

Saithe Assessment
x.sbw

Whiting Assessment
plotB

Plot Biomass, Recruitment, and Landings
estN

Estimate Effective Sample Size
importMCMC

Import Coleraine MCMC Results
estSigmaR

Estimate Recruitment Sigma
getSigmaR

Extract Recruitment sigma
scape-package

Statistical Catch-at-Age Plotting Environment