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scape (version 2.3.3)

Statistical Catch-at-Age Plotting Environment

Description

Import, plot, and diagnose results from statistical catch-at-age models, used in fisheries stock assessment.

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Version

Install

install.packages('scape')

Monthly Downloads

207

Version

2.3.3

License

GPL-3

Maintainer

Arni Magnusson

Last Published

November 23rd, 2020

Functions in scape (2.3.3)

getN

Extract Sample Size
estSigmaR

Estimate Recruitment Sigma
importMCMC

Import Coleraine MCMC Results
importProj

Import Coleraine MCMC Projections
estSigmaI

Estimate Abundance Index Sigma
estN

Estimate Effective Sample Size
scape-package

Statistical Catch-at-Age Plotting Environment
plotN

Plot Numbers at Age
x.cod

Cod Assessment
plotSel

Plot Selectivity and Maturity
x.sbw

Whiting Assessment
x.saithe

Saithe Assessment
iterate

Get Candidate Sigmas and Sample Sizes
importCol

Import Coleraine Model Results
importADCAM

Import ADCAM Model Results
plotIndex

Plot Abundance Index
x.oreo

Oreo Assessment
plotLA

Plot Length at Age
x.ling

Ling Assessment
plotB

Plot Biomass, Recruitment, and Landings
xproj

MCMC Projections from Cod Assessment
xmcmc

MCMC Results from Cod Assessment
getSigmaI

Extract Abundance Index Sigma
plotCA

Plot Catch at Age
getSigmaR

Extract Recruitment sigma
plotCL

Plot Catch at Length