"logical", indicating whether or not the expression data in the `exprs` slot have been log2-transformed or not.
"numeric", providing an offset applied to expression data in the `exprs` slot when undergoing log2-transformation to avoid trying to take logs of zero.
"numeric", giving the lower limit for an expression value to be classified as "expressed".
"numeric", containing pairwise distances between cells.
"numeric", containing pairwise distances between features.
"numeric", containing reduced-dimension coordinates for cells (generated, for example, by PCA).
"numeric"that can contain bootstrap estimates of the expression or count values.
Methods that operate on SCESet objects constitute the basic scater workflow.
Thanks to the Monocle package (github.com/cole-trapnell-lab/monocle-release/) for their CellDataSet class, which provided the inspiration and template for SCESet.