phyper_test

This Function is used to perform phyper test to get cell types

Performing cell type annotation based on cell markers from a unified database. The approach utilizes correlation-based approach combined with association analysis using Fisher-exact and phyper statistical tests (Upton, Graham JG. (1992) <DOI:10.2307/2982890>).

Mohamed Soudy

sccca

Single-Cell Correlation Based Cell Type Annotation

Sophie LE BARS

Enrico Glaab

phyper_test function

<dl><dt>ref</dt>
<dd>reference gene set.</dd>
<dt>overlap</dt>
<dd>genes that pass the correlation threshold.</dd></dl>

Arguments

Mohmed Soudy <a href="/link/Mohamed.soudy%40uni.lu?package=sccca&version=0.1.1" data-mini-rdoc="sccca::Mohamed.soudy@uni.lu">Mohamed.soudy@uni.lu</a> and Sohpie LE BARS <a href="/link/sophie.lebars%40uni.lu?package=sccca&version=0.1.1" data-mini-rdoc="sccca::sophie.lebars@uni.lu">sophie.lebars@uni.lu</a> and Enrico Glaab <a href="/link/enrico.glaab%40uni.lu?package=sccca&version=0.1.1" data-mini-rdoc="sccca::enrico.glaab@uni.lu">enrico.glaab@uni.lu</a>

Author

Performs phyper test to get the significant overlap between genes for cell type assignment — phyper_test

<dl>

<dt>ref</dt>
<dd>reference gene set.</dd>


<dt>overlap</dt>
<dd>genes that pass the correlation threshold.</dd>

</dl>

Mohmed Soudy <a href='mailto:Mohamed.soudy@uni.lu'>Mohamed.soudy@uni.lu</a> and Sohpie LE BARS <a href='mailto:sophie.lebars@uni.lu'>sophie.lebars@uni.lu</a> and Enrico Glaab <a href='mailto:enrico.glaab@uni.lu'>enrico.glaab@uni.lu</a>

phyper_test: Performs phyper test to get the significant overlap between genes for cell type assignment

Description

Usage

Value

Arguments

Author

Examples