fac2palette

vector of cluster labels, names contain cell names

groups

function, which accepts number of colors and return list of colors (i.e. see 'colorRampPalette')

palette

Color for unclassified cells (default='gray50')

unclassified.cell.color

Encodes logic of how to handle named-vector and functional palettes. Used primarily within embeddingGroupPlot()

Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.

fac2palette: Encodes logic of how to handle named-vector and functional palettes. Used primarily within embeddingGroupPlot()

Description

Usage

Arguments

Value