sccore (version 1.0.6)

saveDeAsJson: Save DE results as JSON tables for viewing in browser

Description

Save DE results as JSON tables for viewing in browser

Usage

saveDeAsJson(
  de.raw,
  sample.groups = NULL,
  saveprefix = NULL,
  dir.name = "JSON",
  gene.metadata = NULL,
  verbose = TRUE
)

Value

JSON files, table of content, and viewer files for viewing DE results in browser

Arguments

de.raw

List of DE results from e.g. cacoa, conos

sample.groups

Sample groups as named list, each element containing a vector of samples. Can be retrieved from e.g. package cacoa (default=NULL)

saveprefix

Prefix for created files (default=NULL)

dir.name

Name for directory with results. If it doesn't exist, it will be created. To disable, set as NULL (default="JSON")

gene.metadata

(default=NULL) # Needs explanation

verbose

Show progress (default=TRUE)

Examples

if (FALSE) {
saveDeAsJson(de.raw, sample.groups)
}
## The results can be viewed in a webbrowser by opening toc.html