ScellpamSetDebug

Sets debugging in scellpam package to ON (with TRUE) or OFF (with FALSE) for several parts of it. 
On package load the default status is OFF. 
Setting debugging of any part to ON shows a message. Setting to OFF does not show anything (since debugging is OFF...)

PAM (Partitioning Around Medoids) algorithm application to samples of single cell sequencing techniques
with a high number of cells (as many as the computer memory allows). The package uses a binary format to
store matrices (either full, sparse or symmetric) in files written in the disk that can contain any data type
(not just double) which allows its manipulation when memory is sufficient to load them as int or float, but not
as double. The PAM implementation is done in parallel, using several/all the cores of the machine, if it has them.
This package shares a great part of its code with packages 'jmatrix' and 'parallelpam' but their functionality is
included here so there is no need to install them.

Juan Domingo

scellpam

Applying Partitioning Around Medoids to Single Cell Data with
High Number of Cells

Guillermo Ayala

Spanish Ministry of Science and Innovation, MCIN/AEI <doi:10.13039/501100011033>

ScellpamSetDebug function

<dl><dt>deb</dt>
<dd>boolean, TRUE to generate debug messages for the scellpam (biological part) of this package and FALSE to turn them off. Default: true</dd>
<dt>debparpam</dt>
<dd>boolean, TRUE to generate debug messages for the parallel PAM part inside this package and FALSE to turn them off. Default: false</dd>
<dt>debjmat</dt>
<dd>boolean, TRUE to generate debug messages for the jmatrix part inside this package and FALSE to turn them off. Default: false</dd></dl>

Arguments

Sets debugging in scellpam package to ON (with TRUE) or OFF (with FALSE) for several parts of it. 
On package load the default status is OFF. 
Setting debugging of any part to ON shows a message. Setting to OFF does not show anything (since debugging is OFF...)

ScellpamSetDebug — ScellpamSetDebug

<dl>

<dt>deb</dt>
<dd>boolean, TRUE to generate debug messages for the scellpam (biological part) of this package and FALSE to turn them off. Default: true</dd>


<dt>debparpam</dt>
<dd>boolean, TRUE to generate debug messages for the parallel PAM part inside this package and FALSE to turn them off. Default: false</dd>


<dt>debjmat</dt>
<dd>boolean, TRUE to generate debug messages for the jmatrix part inside this package and FALSE to turn them off. Default: false</dd>

</dl>

ScellpamSetDebug: ScellpamSetDebug

Description

Usage

Value

Arguments

Examples