calc_relabun

Calculate OTU relative abundances from a shared file

A collection of useful functions and example code created and
used by the Schloss Lab for reproducible microbiome research. Perform
common tasks like read files created by mothur <https://mothur.org/>,
tidy up your microbiome data, and format R Markdown documents for
publication. See the website <http://www.schlosslab.org/schtools/>
for more information, documentation, and examples.

Kelly Sovacool

schtools

Schloss Lab Tools for Reproducible Microbiome Research

calc_relabun function

<dl><dt>abs_abun_dat</dt>
<dd>a data frame from reading in a <a href="https://mothur.org/wiki/shared_file/">shared file</a>.
Should contain a <code>Group</code> column for sample names,
<code>Otu</code> columns for absolute counts of each OTU,
and rows as each sample.</dd></dl>

Arguments

Kelly Sovacool <a href="/link/sovacool%40umich.edu?package=schtools&version=0.4.1" data-mini-rdoc="schtools::sovacool@umich.edu">sovacool@umich.edu</a>

Author

Calculate OTU relative abundances from a shared file — calc_relabun

<dl>

<dt>abs_abun_dat</dt>
<dd>a data frame from reading in a <a href='https://mothur.org/wiki/shared_file/'>shared file</a>.
Should contain a <code>Group</code> column for sample names,
<code>Otu</code> columns for absolute counts of each OTU,
and rows as each sample.</dd>

</dl>

Kelly Sovacool <a href='mailto:sovacool@umich.edu'>sovacool@umich.edu</a>

calc_relabun: Calculate OTU relative abundances from a shared file

Description

Usage

Value

Arguments

Author

Examples