pedcan_expression

Gene expression of 108 CCLE cell lines from 5 different pediatric cancers.

datasets

Omics data (e.g. transcriptomics, proteomics,
metagenomics...)  offer a detailed and multi-dimensional perspective
on the molecular components and interactions within complex biological
(eco)systems.  Analyzing these data requires adapted procedures, which
are implemented as steps according to the 'recipes' package.

Antoine Bichat

scimo

Extra Recipes Steps for Dealing with Omics Data

Antoine BICHAT

Julie AUBERT

pedcan_expression function

A <a href="https://tibble.tidyverse.org/reference/tibble-package.html">tibble</a> with columns:<dl>
<dt>cell_line</dt>
<dd>Cell line name.</dd><dt>sex</dt>
<dd>One of <code>Male</code>, <code>Female</code> or <code>Unknown</code>.</dd><dt>event</dt>
<dd>One of <code>Primary</code>, <code>Metastasis</code> or <code>Unknown</code>.</dd><dt>disease</dt>
<dd>One of <code>Neuroblastoma</code>, <code>Ewing Sarcoma</code>,
<code>Rhabdomyosarcoma</code>, <code>Embryonal Tumor</code> or <code>Osteosarcoma</code>.</dd><dt>other columns</dt>
<dd>Expression of the gene, given in log2(TPM + 1).</dd>
</dl>

Format

Gene Expression of Pediatric Cancer — pedcan_expression

A <a href='https://tibble.tidyverse.org/reference/tibble-package.html'>tibble</a> with columns:<dl>
<dt>cell_line</dt>
<dd>Cell line name.</dd>

<dt>sex</dt>
<dd>One of <code>Male</code>, <code>Female</code> or <code>Unknown</code>.</dd>

<dt>event</dt>
<dd>One of <code>Primary</code>, <code>Metastasis</code> or <code>Unknown</code>.</dd>

<dt>disease</dt>
<dd>One of <code>Neuroblastoma</code>, <code>Ewing Sarcoma</code>,
<code>Rhabdomyosarcoma</code>, <code>Embryonal Tumor</code> or <code>Osteosarcoma</code>.</dd>

<dt>other columns</dt>
<dd>Expression of the gene, given in log2(TPM + 1).</dd>


</dl>

pedcan_expression: Gene Expression of Pediatric Cancer

Description

Usage

Arguments

Format

Examples