annotate_tree

Find maximum lilkelihood assignment of mutations on a tree

Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).

Teng Gao

scistreer

Maximum-Likelihood Perfect Phylogeny Inference at Scale

Evan Biederstedt

Peter Kharchenko

Yufeng Wu

annotate_tree function

<dl><dt>tree</dt>
<dd>phylo Single-cell phylogenetic tree</dd>
<dt>P</dt>
<dd>matrix Genotype probability matrix</dd></dl>

Arguments

Find maximum lilkelihood assignment of mutations on a tree — annotate_tree

<dl>

<dt>tree</dt>
<dd>phylo Single-cell phylogenetic tree</dd>


<dt>P</dt>
<dd>matrix Genotype probability matrix</dd>

</dl>

annotate_tree: Find maximum lilkelihood assignment of mutations on a tree

Description

Usage

Value

Arguments

Examples